PostersPresentations
TOPICCONFERENCEAUTHOR
2018
Galaxy-based multi-stage two-step database searching pipeline for improved proteogenomics and metaproteomics analysisBICB SymposiumP.Kumar
Galaxy-based multi-stage two-step database searching pipeline for improved multi-omics analysisUS-HUPOP.Kumar
Using HUPO Proteomics Standards With Software Inputs and Outputs for Galaxy-based Multi-omic InformaticsUS-HUPOT.McGowan
Evaluation of precursor-based peptide quantification software tools within the Galaxy frameworkUS-HUPOS.Mehta
Adding another horse to the carriage: using ERLIC-MS with RPLC-MS to help carry the load of expanding protein sequence coverage.ASMS @ SanDiego, CA, USAC.Guerrero
Unraveling the functions of microbiomes: A comprehensive evaluation of software tools for functional metaproteomics.ASMS @ SanDiego, CA, USAC.Easterly
Avoiding Fake news: Post analysis FDR tool for improving confidence in next-generation proteomic results.ASMS @ SanDiego, CA, USAS.Hubler
Slice and Dice: An accessible Galaxy-baed metaproteomic database sectioning approach improves taxonomic and functional microbiome characterization.ASMS @ SanDiego, CA, USAP.Kumar
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes.ASMS @ SanDiego, CA, USAP.Jagtap
From raw data to results on your screen: A suite of accessible software for comprehensice proteogenomic informaticsASMS @ SanDiego, CA, USAJ.Johnson
Evaluation of label-free peptide quantification tools and their application to multi-omic workflows within the Galaxy-P framework.ASMS @ SanDiego, CA, USAS.Mehta
2017
Development and evaluation of Galaxy based one-click multi stage database searching pipeline for proteogenomics analysisBICB @ Rochester,MNP.Kumar
A Galaxy-based, multi-staged, two-step searching pipeline for improved peptide identification in next generation proteomic studiesASMS @ Indianapolis,INP.Kumar
Enhancing The Multi-Omics Visualization Platform (MVP) Plug-In For Galaxy-Based ApplicationsASMS @ Indianapolis,INT.McGowan
Multi-omic informatics in the cloud: Galaxy-P takes a ride on JetstreamASMS @ Indianapolis,INT.Griffin
Galaxy-Centered Lab Workflows To Organize Metabolomic AnalysesASMS @ Indianapolis,INA.Eschenlauer
Functional analysis of microbiomes by metaproteomics withing Galaxy frameworkASM @ New Orleans,LAP.Jagtap
2016
From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy platformASMS @ San Antonio, TXG.Onsongo
A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based applicationsASMS @ San Antonio, TXT.McGowan
Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based Proteomic and Protegenomic StudiesASMS @ San Antonio, TXC.Guerrero
Galaxy-P: Recent developments and emerging applicationASMS @ San Antonio, TXT.Griffin
2015
Democratizing and expanding the reach of DIA Mass spectrometry: Developing OpenSwath tools and workflows within user-friendly Galaxy-P platformASMS @ St.Louis, MOP.Jagtap
Metaproteomic analysis of human cervical-vaginal fluid in residual Pap tests: Insights into the cervical microbiomeASMS @ St.Louis, MOT.Griffin
Revealing Pathways In COPD-Associated Lung Cancer Via Large-Scale Quantitative Multi-omic AnalysisASMS @ St.Louis, MOB.Sandri
Plugging Proteomics Peptide-Spectral -Match visualization infor GalaxyASMS @ St.Louis, MOJ.Johnson
2014
Flexible, accessible and reproducible workflows for Tandem proteogenomic and metaproteomic analysis using GalaxyP platformASMS @ Baltimore, MDP.Jagtap
The Galaxy framework as a unifying bioinformatics solution for ‘Omics’ core facilitiesABRF @ Alburquerque, NMP.Jagtap
Identifying Novel Peptide Sequence Variants from High Throughput RNA-Seq Data Via Flexible Proteomic Database Generation using the Galaxy FrameworkASMS @ Baltimore, MDJ.Johnson
Community-Based development and evaluation of biological mass spectrometry software via the Galaxy tool shedASMS @ Baltimore, MDB.Gottschalk
2013
An Integrated Systems biology platform for complete proteogenomic analysisASMS @ Minneapolis, MNP.Jagtap
Reproducible Proteomic workflows using extensions to the Galaxy frameworkASMS @ Minneapolis, MNJ.Johnson
Quantitative Analysis of the C2C12 and Mouse Skeletal Muscle Proteomes using a Multiplexing StrategyASMS @ Minneapolis, MNM.Henderson
Building Proteomic Application Platforms for Cloud Computing Environments with CloudBioLinuxASMS @ Minneapolis, MNJ.Chilton
A comprehensive characterization of the pig islet proteome: PTMs, amino acid substitutions and novel isoformsASMS @ Minneapolis, MNE.Jong
Automated Quantification and Analysis of SILAC-iTRAQ Dual-labeled DataASMS @ Minneapolis, MNG.Onsongo
Galaxy-P: Transforming MS-based proteomic informatics via innovative workflow development, dissemination, standardization and transparencyASMS @ Minneapolis, MNT.Griffin
TOPICCONFERENCEPRESENTER
2018
Galaxy-P: an accessible resource for multi-omics analysisLorne ConferenceM. Doyle
Reproducible and robust quantitative functional analysis of metaproteomes using the Galaxy platformUSHUPO @ Minneapolis, MNC.Easterly
From Raw Data to New Discoveries: Towards a Complete Proteogenomic Informatics SolutionUSHUPO @ Minneapolis, MNT.Griffin
A Galaxy based Multi-Omic Informatics hub for Cancer researchersITCRT.Griffin and P.Jagtap
2017
Complementary ERLIC and RPLC online chromatographic separations for discovery of protein sequence variants via LC-MS-based proteogenomicsHPLC@Jeju, KoreaT Griffin
Approaches to uncovering the ‘dark’ proteomeBMBB retreat@Itasca,MNT Griffin
GalaxyP: A Galaxy Proteomics CommunityGAMe@Melbourne, AustraliaI Cooke
Functional Microbiome analysis using metaproteomics within Galaxy FrameworkUniversity of Chicago, ILP Jagtap
Metaproteomics for the future: Democratizing functional analysis of microbiomes via community based informatics development and dissemination   [Video]ASMS @ Indianapolis,INP.Jagtap
Metaproteomics for the future: Functional microbiome analysis community based informatics development and disseminationIMS @ Sardignia,ItalyP.Jagtap
Advancing metaproteomics research via comminity based informatics development and disseminationGCC@ Montepelier, FranceP.Jagtap
ProteogenomicsPersistent @ Pune,IndiaP.Jagtap
2016
Proteogenomics in Galaxy: Identifying Novel ‘Constellations’ of Proteoforms using Transcriptomic and Proteomics Data   [Video]GCC @ Bloomington,INP.Jagtap
New biochemical discoveries made possible by multi-omicsUW@LaCrosse,WIT.Griffin
Embracing complexity and diversity: Metaproteomics within the Galaxy framework   [Video]GCC @ Bloomington,INP.Jagtap
The Galaxy platform for Multi-omic data analysis and InformaticsABRF @ Fort Lauderdale,FLD.Clements
Embracing complexity and diversity: Discovery Metaproteomics of multiple microbiomes using the Galaxy frameworkASMS @ San Antonio, TXP.Jagtap
2015
Search GUI and Peptide Shaker deployed in the Galaxy framework: A powerful informatics platform for protein identification and beyondASMS @ St.Louis, MOI.Cooke
Proteomics data analysis using Galaxy-PCMSP @ FerringtonP.Jagtap
Galaxy-Based Peptide Shaker tools and applications with a focus on downstream applicationsASMS @ St.Louis, MOI.Cooke
The Galaxy framework as a bioinformatics solution for proteomics and multi-omics studiesABRF @ St.Louis, MOP.Jagtap
Proteogenomics and Metaproteomics using the Galaxy PlatformMultiomics_Talks @ CCMB, IndiaP.Jagtap
Proteogenomics and Metaproteomics using the Galaxy PlatformMultiomics_Talks @ IICT, IndiaP.Jagtap
Proteogenomics and Metaproteomics using the Galaxy PlatformMultiomics_Talks @ Delhi, IndiaP.Jagtap
2014
Public Sharing Of Complex MS-Based Qualitative And Quantitative Proteomic Data Analysis Workflows: Adding Value To Big Data RepositoriesASMS @ Baltimore, MDT.Griffin
The Galaxy framework as a unifying bioinformatics solution for ‘omics’ core facilitesGCC @ Baltimore,MDP.Jagtap
Large scale multi-omic data integration and analysis: Challenges and OppurtunitiesBICB symposium @ Rochestor, MNT.Griffin
Metaproteomics: and opportunity-rich complement to metagenomicsMetagenomics Supergroup @ Minneapolis,MNT.Griffin
DIA : Learnings from AlburqurqueABRF @ Alburquerque, NMP.Jagtap
The Galaxy framework as a unifying bioinformatics solution for Multi-omic data analysisABRF @ Alburquerque, NMP.Jagtap
2013
Galaxy-P Update:Project-Based Approach to Developing resources for Proteomics Research MSI @ Minneapolis,MNP.Jagtap
2012
Galaxy-P for ProteomicsGCC @ Chicago,ILP.Jagtap