Conference Presentations

Posters Presentations

TOPIC	CONFERENCE	AUTHOR
2018
Integrative proteo-transcriptomics workflows within the Galaxy framework to explore the correlation between the expression of RNA and proteins	GCC @ Portland, OR, USA	P.Kumar
Evaluation of moFF and FlashLFQ for label free peptide quantification in proteomic workflows within Galaxy-P Framework.	GCC @ Portland, OR, USA	S.Mehta
CRAVAT (Cancer-Related Analysis of Variants Toolkit) integration into Galaxy-P and extension towards proteogenomic studies	GCC @ Portland, OR, USA	R.Sajulga
Galaxy-based multi-stage two-step database searching pipeline for improved proteogenomics and metaproteomics analysis	BICB Symposium	P.Kumar
Galaxy-based multi-stage two-step database searching pipeline for improved multi-omics analysis	US-HUPO	P.Kumar
Using HUPO Proteomics Standards With Software Inputs and Outputs for Galaxy-based Multi-omic Informatics	US-HUPO	T.McGowan
Evaluation of precursor-based peptide quantification software tools within the Galaxy framework	US-HUPO	S.Mehta
Adding another horse to the carriage: using ERLIC-MS with RPLC-MS to help carry the load of expanding protein sequence coverage.	ASMS @ SanDiego, CA, USA	C.Guerrero
Unraveling the functions of microbiomes: A comprehensive evaluation of software tools for functional metaproteomics.	ASMS @ SanDiego, CA, USA	C.Easterly
Avoiding Fake news: Post analysis FDR tool for improving confidence in next-generation proteomic results.	ASMS @ SanDiego, CA, USA	S.Hubler
Slice and Dice: An accessible Galaxy-baed metaproteomic database sectioning approach improves taxonomic and functional microbiome characterization.	ASMS @ SanDiego, CA, USA	P.Kumar
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes.	ASMS @ SanDiego, CA, USA	P.Jagtap
From raw data to results on your screen: A suite of accessible software for comprehensice proteogenomic informatics	ASMS @ SanDiego, CA, USA	J.Johnson
Evaluation of label-free peptide quantification tools and their application to multi-omic workflows within the Galaxy-P framework.	ASMS @ SanDiego, CA, USA	S.Mehta
2017
Development and evaluation of Galaxy based one-click multi stage database searching pipeline for proteogenomics analysis	BICB @ Rochester,MN	P.Kumar
A Galaxy-based, multi-staged, two-step searching pipeline for improved peptide identification in next generation proteomic studies	ASMS @ Indianapolis,IN	P.Kumar
Enhancing The Multi-Omics Visualization Platform (MVP) Plug-In For Galaxy-Based Applications	ASMS @ Indianapolis,IN	T.McGowan
Multi-omic informatics in the cloud: Galaxy-P takes a ride on Jetstream	ASMS @ Indianapolis,IN	T.Griffin
Galaxy-Centered Lab Workflows To Organize Metabolomic Analyses	ASMS @ Indianapolis,IN	A.Eschenlauer
Functional analysis of microbiomes by metaproteomics withing Galaxy framework	ASM @ New Orleans,LA	P.Jagtap
2016
From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy platform	ASMS @ San Antonio, TX	G.Onsongo
A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based applications	ASMS @ San Antonio, TX	T.McGowan
Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based Proteomic and Protegenomic Studies	ASMS @ San Antonio, TX	C.Guerrero
Galaxy-P: Recent developments and emerging application	ASMS @ San Antonio, TX	T.Griffin
2015
Democratizing and expanding the reach of DIA Mass spectrometry: Developing OpenSwath tools and workflows within user-friendly Galaxy-P platform	ASMS @ St.Louis, MO	P.Jagtap
Metaproteomic analysis of human cervical-vaginal fluid in residual Pap tests: Insights into the cervical microbiome	ASMS @ St.Louis, MO	T.Griffin
Revealing Pathways In COPD-Associated Lung Cancer Via Large-Scale Quantitative Multi-omic Analysis	ASMS @ St.Louis, MO	B.Sandri
Plugging Proteomics Peptide-Spectral -Match visualization infor Galaxy	ASMS @ St.Louis, MO	J.Johnson
2014
Flexible, accessible and reproducible workflows for Tandem proteogenomic and metaproteomic analysis using GalaxyP platform	ASMS @ Baltimore, MD	P.Jagtap
The Galaxy framework as a unifying bioinformatics solution for ‘Omics’ core facilities	ABRF @ Alburquerque, NM	P.Jagtap
Identifying Novel Peptide Sequence Variants from High Throughput RNA-Seq Data Via Flexible Proteomic Database Generation using the Galaxy Framework	ASMS @ Baltimore, MD	J.Johnson
Community-Based development and evaluation of biological mass spectrometry software via the Galaxy tool shed	ASMS @ Baltimore, MD	B.Gottschalk
2013
An Integrated Systems biology platform for complete proteogenomic analysis	ASMS @ Minneapolis, MN	P.Jagtap
Reproducible Proteomic workflows using extensions to the Galaxy framework	ASMS @ Minneapolis, MN	J.Johnson
Quantitative Analysis of the C2C12 and Mouse Skeletal Muscle Proteomes using a Multiplexing Strategy	ASMS @ Minneapolis, MN	M.Henderson
Building Proteomic Application Platforms for Cloud Computing Environments with CloudBioLinux	ASMS @ Minneapolis, MN	J.Chilton
A comprehensive characterization of the pig islet proteome: PTMs, amino acid substitutions and novel isoforms	ASMS @ Minneapolis, MN	E.Jong
Automated Quantification and Analysis of SILAC-iTRAQ Dual-labeled Data	ASMS @ Minneapolis, MN	G.Onsongo
Galaxy-P: Transforming MS-based proteomic informatics via innovative workflow development, dissemination, standardization and transparency	ASMS @ Minneapolis, MN	T.Griffin

TOPIC	CONFERENCE	PRESENTER
2018
Galaxy-based multi-stage two-step database searching pipeline for improved multi-omics analysis	USHUPO @ Minneapolis, MN, USA	P.Kumar
Proteo-transcriptomics workflow exploring correlation between the expression of RNA and proteins	GCC @Portland, OR, USA	P.Kumar
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function & protein expression in complex microbiomes	GCC @ Portland, OR, USA	C.Easterly and P.Jagtap
Galaxy-P: an accessible resource for multi-omics analysis	Lorne Conference	M. Doyle
Reproducible and robust quantitative functional analysis of metaproteomes using the Galaxy platform	USHUPO @ Minneapolis, MN	C.Easterly
From Raw Data to New Discoveries: Towards a Complete Proteogenomic Informatics Solution	USHUPO @ Minneapolis, MN	T.Griffin
A Galaxy based Multi-Omic Informatics hub for Cancer researchers	ITCR	T.Griffin and P.Jagtap
2017
Complementary ERLIC and RPLC online chromatographic separations for discovery of protein sequence variants via LC-MS-based proteogenomics	HPLC@Jeju, Korea	T Griffin
Approaches to uncovering the ‘dark’ proteome	BMBB retreat@Itasca,MN	T Griffin
GalaxyP: A Galaxy Proteomics Community	GAMe@Melbourne, Australia	I Cooke
Functional Microbiome analysis using metaproteomics within Galaxy Framework	University of Chicago, IL	P Jagtap
Metaproteomics for the future: Democratizing functional analysis of microbiomes via community based informatics development and dissemination [Video]	ASMS @ Indianapolis,IN	P.Jagtap
Metaproteomics for the future: Functional microbiome analysis community based informatics development and dissemination	IMS @ Sardignia,Italy	P.Jagtap
Advancing metaproteomics research via comminity based informatics development and dissemination	GCC@ Montepelier, France	P.Jagtap
Proteogenomics	Persistent @ Pune,India	P.Jagtap
2016
Proteogenomics in Galaxy: Identifying Novel ‘Constellations’ of Proteoforms using Transcriptomic and Proteomics Data [Video]	GCC @ Bloomington,IN	P.Jagtap
New biochemical discoveries made possible by multi-omics	UW@LaCrosse,WI	T.Griffin
Embracing complexity and diversity: Metaproteomics within the Galaxy framework [Video]	GCC @ Bloomington,IN	P.Jagtap
The Galaxy platform for Multi-omic data analysis and Informatics	ABRF @ Fort Lauderdale,FL	D.Clements
Embracing complexity and diversity: Discovery Metaproteomics of multiple microbiomes using the Galaxy framework	ASMS @ San Antonio, TX	P.Jagtap
2015
Search GUI and Peptide Shaker deployed in the Galaxy framework: A powerful informatics platform for protein identification and beyond	ASMS @ St.Louis, MO	I.Cooke
Proteomics data analysis using Galaxy-P	CMSP @ Ferrington	P.Jagtap
Galaxy-Based Peptide Shaker tools and applications with a focus on downstream applications	ASMS @ St.Louis, MO	I.Cooke
The Galaxy framework as a bioinformatics solution for proteomics and multi-omics studies	ABRF @ St.Louis, MO	P.Jagtap
Proteogenomics and Metaproteomics using the Galaxy Platform	Multiomics_Talks @ CCMB, India	P.Jagtap
Proteogenomics and Metaproteomics using the Galaxy Platform	Multiomics_Talks @ IICT, India	P.Jagtap
Proteogenomics and Metaproteomics using the Galaxy Platform	Multiomics_Talks @ Delhi, India	P.Jagtap
2014
Public Sharing Of Complex MS-Based Qualitative And Quantitative Proteomic Data Analysis Workflows: Adding Value To Big Data Repositories	ASMS @ Baltimore, MD	T.Griffin
The Galaxy framework as a unifying bioinformatics solution for ‘omics’ core facilites	GCC @ Baltimore,MD	P.Jagtap
Large scale multi-omic data integration and analysis: Challenges and Oppurtunities	BICB symposium @ Rochestor, MN	T.Griffin
Metaproteomics: and opportunity-rich complement to metagenomics	Metagenomics Supergroup @ Minneapolis,MN	T.Griffin
DIA : Learnings from Alburqurque	ABRF @ Alburquerque, NM	P.Jagtap
The Galaxy framework as a unifying bioinformatics solution for Multi-omic data analysis	ABRF @ Alburquerque, NM	P.Jagtap
2013
Galaxy-P Update:Project-Based Approach to Developing resources for Proteomics Research	MSI @ Minneapolis,MN	P.Jagtap
2012
Galaxy-P for Proteomics	GCC @ Chicago,IL	P.Jagtap

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