TOPIC | CONFERENCE | PRESENTER |
2024 | | |
Investigating Key Host, Microbial and Variant Peptides for Detection of Oral Cancer using Advanced Multi-omics Methods. | American Society of Mass Spectrometry 2024, Anaheim CA, June 2024 | P.Jagtap |
Proteome Informatics Research Group (iPRG) | ABRF, Minneapolis, MN, April 2024 | P.Jagtap |
Clinical Metaproteomics Workflow To Study Host-Microbiome Dynamics | University of Vienna, June 2024 | P.Jagtap |
A Novel Host And Microbial Biomarker Panel For Early Detection Of Ovarian Cancer | Minnesota Ovarian Cancer Alliance, Minneapolis MN, May 2024 | T.Griffin |
The Proteogenomics Shared Resource: From Novel proteoforms to microbiome functions in Cancer Using customized multi-omic Tools | Masonic Cancer Center, Minneapolis, MN May 2024 | P.Jagtap, T.Griffin |
A Galaxy-based immunopeptidogenomic pipeline for neoantigen discovery | GCC,Brno, Czech Republic, June 2024 | T.Griffin |
Clinical Metaproteomics Workflow To Study Host-Microbiome Dynamics | GCC, Brno, Czech Republic, June 2024 | P.Jagtap |
2023 | | |
Enrichment Of Microbial Proteins For Mass Spectrometry-Based Clinical Metaproteomics Studies | Cancer Microbiome Symposium. Minneapolis, September 2023 | P.Jagtap |
Towards an integrated microbiome-host protein biomarker panel for early detection of ovarian cancer in routinely collected clinical samples | Cancer Microbiome Symposium. Minneapolis, September 2023 | T.Griffin |
Metaproteomics: Bioinformatic Workflow for Metaproteomic Analysis of Clinical Samples | Agharkar Research Institute, Pune (India). February 2023 | P.Jagtap |
Bioinformatic Workflow for Metaproteomic Analysis of Host-Microbe Dynamics in Clinical Samples | Fifth International Metaproteomics Symposium, Avignon (France). April 2023. | P.Jagtap |
Integrative Multiomics in Galaxy | Fifth International Metaproteomics Symposium, Avignon (France). April 2023. | P.Jagtap, M.Arntzen |
A meta-omics workflow to generate a novel host and microbial
biomarker panel for early detection of ovarian cancer | American Society of Mass Spectrometry 2023, Houston, TX. June 2023. | S.Mehta |
2022 | | |
A Metaproteomics Bioinformatics Workflow To Study Host- Microbe Dynamics In Clinical Samples | Human Proteomics Organization (HUPO) Conference, Cancun (Mexico). December 2022. | P.Jagtap |
Towards an integrated microbiome‐host protein biomarker panel for early detection of ovarian cancer in routinely collected clinical samples | Masonic Cancer Center Microbiome and Cancer Symposium, September, 2022, University of Minnesota | T.Griffin |
An integrated galaxy-driven workflow for host-microbiota proteomics and targeted assay development to study host-microbe dynamics in clinical cystic fibrosis samples | GCC 2022, Minneapolis | T.Griffin |
METAPROTEOMICS: Promoting Functional Analysis of Microbiome through online educational resources. | Colorado State University (ARC-BIO Webinar Series) | P.Jagtap |
Can data-independent acquisition mass spectrometry be used confidently for metaproteomics? | ASMS 2022 Conference, Minneapolis | P.Jagtap |
FragPipe in Galaxy: Wrapper Implementation for a Complete Proteomics Tool Suite | GCC 2022, Minneapolis | R.Wagner |
TO SEEK OUT NEW TALENT AND NEW PERSPECTIVES: PROMOTING FUNCTIONAL ANALYSIS OF MICROBIOME THROUGH ONLINE EDUCATIONAL RESOURCES VIA THE GALAXY PLATFORM | GCC 2022, Minneapolis | P.Jagtap |
Omicron, Delta Waves and Beyond: Galaxy-generated variant-specific peptide panels for diagnosis, characterization, and surveillance of emerging SARS-CoV-2 variants | GCC 2022, Minneapolis | S.Mehta |
Introduction to the Galaxy-P Project | IIT Bombay, Mumbai (Maharashtra) | P.Jagtap |
Introduction to Metaproteomics | IIT Bombay, Mumbai (Maharashtra) | P.Jagtap |
“Bottom-Up against FIRE”: Comparing bottom-up proteomics and a modified Edman degradation methodology for automated, untargeted protein adductomics analysis within the Galaxy platform. | GCC 2022, Minneapolis | A.Rajczewski |
Enabling Proteo-informatics Analysis via Galaxy-P Platform | CSIR-IMTech, Chandigarh (Haryana/Punjab) | P.Jagtap |
Our Experiments With Metaproteomics: Ten Years of Galaxy-P | Tata Institute of Fundamental Research, Mumbai (Maharashtra) | P.Jagtap |
Our Experiments With Metaproteomics: Ten Years of Galaxy-P | CSIR-National Institute of Oceanography, Dona Paula (Goa) | P.Jagtap |
A METAPROTEOMICS BIOINFORMATICS WORKFLOW TO STUDY HOST-MICROBE DYNAMICS IN CLINICAL SAMPLES | IMSC 2022, Maastricht (Netherlands) | P.Jagtap |
2021 | | |
Functional Microbiome Analysis Using Quantitative Metaproteomics within the Galaxy Framework. | Special Seminar Series on Microbiomes organized by NSERC CREATE TECHNOMISE, University of Ottawa | P.Jagtap |
Metaproteomics: Analyzing Microbiomes Using Proteomics. | Tri-Service Microbiome Consortium Topical Meeting: Microbiome Bioinformatics | P.Jagtap |
Functional Microbiome Analysis Using Quantitative Metaproteomics within the Galaxy Framework. | Special Seminar Series on Microbiomes organized by NSERC CREATE TECHNOMISE, University of Ottawa | P.Jagtap |
Analysis of Functions Expressed by Microbiomes Using Metaproteomics | HUPO-Reconnect 2021 | P.Jagtap |
Promoting metaproteomics: Empowering researchers through online, on-demand metaproteomics educational resources and training materials via the Galaxy platform | International Metaproteomics Symposium | P.Jagtap |
Promoting functional analysis of microbiome through online educational resources via the Galaxy Platform | Proteomics Society of India (CCMB) | P.Jagtap |
Quantitative Metaproteomics in Microbiomes of Diverse Complexity via Data-dependent and Data-independent Acquisition Mass Spectrometry | ASMS 2021 | P.Jagtap |
Metaproteomics as a tool to reveal microbial contributions to cancer | Cancer Microbiome UMN2021 | A.Rajczewski |
Metaproteomics:Analyzing MicrobiomeUsing Proteomics | TSMC-Topical 2021 | P.Jagtap |
Out of the shadows: Towards community‐based, reproducible informatics tools and workflows for integrative multi‐omic analysis. | IRSA Annual Conference | T.Griffin |
Galaxy Resources for Educators and Trainers | Galaxy Resources Webinar series | S.Mehta |
Quantitative Metaproteomics using Galaxy Platform: Measuring functional microbiome via Data-Dependent and Data-Independent Acquisition Mass spectrometry. | GCC 2021 | P.Jagtap and S.Mehta |
A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology. | GCC 2021 | T.Griffin |
A Galaxy-based evaluation of optical peptide targets for MS-based detection of SARS-CoV-2 in clinical samples. | GCC 2021 | A.Rajczewski |
Galaxy Workflows for analysis of COVID 19 Mass Spectrometry datasets. Link to recording. | ELIXIR - COVID analysis in Galaxy - FEB 2021 | S.Mehta and P.Jagtap |
iPRG 2020 : Proteome Informatics Research Group Study on Metaproteomics. Link to slides. | ABRF 2021 Virtual (March 2021) | P.Jagtap and M.Palmblad |
2020 | | |
Linking genomes and proteomes for cancer research studies | The MCC Proteogenomics Core - May 2020 | T.Griffin and P.Jagtap |
Proteogenomics: challenges, applications and opportunities | KDDW 2020 | T.Griffin |
Data Science Using Galaxy-P Platform. Link to recording. | ICDSB 2020 | P.Jagtap |
Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. Link to recording. | BCC 2020 | S.Mehta |
An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P. Link to recording. | BCC 2020 | A.Rajczewski |
A Galaxy‐Based Multi‐Omic Informatics Hub for Cancer Researchers | NCI Data Science Seminar Series @ WebZoom | P.Jagtap and T.Griffin |
A Galaxy-based meta-omic approach for characterizing microbiome functional dynamics via integrated metaproteomics and metatranscriptomics abundance analysis | ASMS 2020 Reboot | P.Jagtap |
2019 | | |
Mass spectrometry-based multi-omics for studying health and disease | RPI @ Troy, NY, USA | T.Griffin |
Functional Microbiome Analysis Within Galaxy Framework | IMTech @ Chandigarh, India | P.Jagtap |
Proteogenomics tools and workflows within Galaxy platform | PSI @ Karnal, India | P.Jagtap |
Working towards multi-omics integration: Tools and workflows within Galaxy-P Platform | Elucidata @ New Delhi, India | P.Jagtap |
Interactive Galaxy Visualization for Multi-omics | GCC @ Freiburg, Germany | R Sajulga |
Rootless galaxy docker with Backup for our lab Intranet | GCC @ Freiburg, Germany | A. Eschenlauer |
Metaproteomics powered by Metatranscriptomics: towards a multi-omic functional microbiome analysis within Galaxy | GCC @ Freiburg, Germany | P Jagtap |
A "Divide and Conquer" approach to address peptide-spectrum matching challenges of large sequence databases in next generation proteomic applications | ASMS @ Atlanta, GA, USA | P Kumar |
More than just a list: An accessible and flexible informatics environment for proteogenomics | ASMS @ Atlanta, GA, USA | T Griffin |
Galaxy Metabolomics from the Ground up | PAG@ San Diego, CA, USA | A. Eschenlauer |
Multi-Omics with Galaxy for Diverse Biological Applications | PAG @ San Diego, CA,USA | T.Griffin and P.Jagtap |
2018 | | |
Introduction to Proteogenomics | Bioinformatics solutions for ‘Big Data’ Analysis - DEC 2018 | P.Jagtap |
Introduction to Proteogenomics II | Bioinformatics solutions for ‘Big Data’ Analysis - DEC 2018 | P.Jagtap |
Perspectives on Proteogenomics | Bioinformatics solutions for ‘Big Data’ Analysis - DEC 2018 | P.Jagtap |
Tackling Analytical challenges in Cancer proteogenomics using Galaxy framework | PSI @ Pune India | P.Jagtap |
Omics, Comics and Metaproteomics: Analyzing Microbiomes using Proteomics | Saturday Meet Program @ Pune India | P.Jagtap |
Slice and Splice: An accessible galaxy-based metaproteomic database sectioning approach improves taxonomic and functional microbiome characterization | IMS @ Leipzig, Germany | P.Kumar |
Metaquantome: An integrated, quantitative metaproteomics tools reveals connections between taxa, function and protein expression in microbiomes. | IMS @ Leipzig, Germany | P.Jagtap |
Survey of metaproteomics software tools for functional microbiome analysis | IMS @ Leipzig, Germany | P.Jagtap |
Multi-omic informatics for characterizing microbiomes and their role in health, disease and environment | IMS @ Leipzig, Germany | T.Griffin and M.Arntzen |
Galaxy-based multi-stage two-step database searching pipeline for improved multi-omics analysis | USHUPO @ Minneapolis, MN, USA | P.Kumar |
Proteo-transcriptomics workflow exploring correlation between the expression of RNA and proteins | GCC @Portland, OR, USA | P.Kumar |
Galaxy-P: an accessible resource for multi-omics analysis | Lorne Conference | M. Doyle |
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function & protein expression in complex microbiomes | GCC @ Portland, OR, USA | C.Easterly and P.Jagtap |
Reproducible and robust quantitative functional analysis of metaproteomes using the Galaxy platform | USHUPO @ Minneapolis, MN | C.Easterly |
From Raw Data to New Discoveries: Towards a Complete Proteogenomic Informatics Solution | USHUPO @ Minneapolis, MN | T.Griffin |
A Galaxy based Multi-Omic Informatics hub for Cancer researchers | ITCR | T.Griffin and P.Jagtap |
Quantifying Functional Microbiomes using MetaQuantome: An integrated, quantitative metaproteomics tool reveals connections between taxa, function and protein expression in microbiomes. | HUPO @ Orlando, FL, USA | P.Jagtap |
2017 | | |
Complementary ERLIC and RPLC online chromatographic separations for discovery of protein sequence variants via LC-MS-based proteogenomics | HPLC@Jeju, Korea | T Griffin |
Approaches to uncovering the ‘dark’ proteome | BMBB retreat@Itasca,MN | T Griffin |
GalaxyP: A Galaxy Proteomics Community | GAMe@Melbourne, Australia | I Cooke |
Functional Microbiome analysis using metaproteomics within Galaxy Framework | University of Chicago, IL | P Jagtap |
Metaproteomics for the future: Democratizing functional analysis of microbiomes via community based informatics development and dissemination [Video] | ASMS @ Indianapolis,IN | P.Jagtap |
Metaproteomics for the future: Functional microbiome analysis community based informatics development and dissemination | IMS @ Sardignia,Italy | P.Jagtap |
Advancing metaproteomics research via comminity based informatics development and dissemination | GCC@ Montepelier, France | P.Jagtap |
Proteogenomics | Persistent @ Pune,India | P.Jagtap |
2016 | | |
Proteogenomics in Galaxy: Identifying Novel ‘Constellations’ of Proteoforms using Transcriptomic and Proteomics Data [Video] | GCC @ Bloomington,IN | P.Jagtap |
New biochemical discoveries made possible by multi-omics | UW@LaCrosse,WI | T.Griffin |
Embracing complexity and diversity: Metaproteomics within the Galaxy framework [Video] | GCC @ Bloomington,IN | P.Jagtap |
The Galaxy platform for Multi-omic data analysis and Informatics | ABRF @ Fort Lauderdale,FL | D.Clements |
Embracing complexity and diversity: Discovery Metaproteomics of multiple microbiomes using the Galaxy framework | ASMS @ San Antonio, TX | P.Jagtap |
2015 | | |
Search GUI and Peptide Shaker deployed in the Galaxy framework: A powerful informatics platform for protein identification and beyond | ASMS @ St.Louis, MO | I.Cooke |
Proteomics data analysis using Galaxy-P | CMSP @ Ferrington | P.Jagtap |
Galaxy-Based Peptide Shaker tools and applications with a focus on downstream applications | ASMS @ St.Louis, MO | I.Cooke |
The Galaxy framework as a bioinformatics solution for proteomics and multi-omics studies | ABRF @ St.Louis, MO | P.Jagtap |
Proteogenomics and Metaproteomics using the Galaxy Platform | Multiomics_Talks @ CCMB, India | P.Jagtap |
Proteogenomics and Metaproteomics using the Galaxy Platform | Multiomics_Talks @ IICT, India | P.Jagtap |
Proteogenomics and Metaproteomics using the Galaxy Platform | Multiomics_Talks @ Delhi, India | P.Jagtap |
2014 | | |
Public Sharing Of Complex MS-Based Qualitative And Quantitative Proteomic Data Analysis Workflows: Adding Value To Big Data Repositories | ASMS @ Baltimore, MD | T.Griffin |
The Galaxy framework as a unifying bioinformatics solution for ‘omics’ core facilites | GCC @ Baltimore,MD | P.Jagtap |
Large scale multi-omic data integration and analysis: Challenges and Oppurtunities | BICB symposium @ Rochestor, MN | T.Griffin |
Metaproteomics: and opportunity-rich complement to metagenomics | Metagenomics Supergroup @ Minneapolis,MN | T.Griffin |
DIA : Learnings from Alburqurque | ABRF @ Alburquerque, NM | P.Jagtap |
The Galaxy framework as a unifying bioinformatics solution for Multi-omic data analysis | ABRF @ Alburquerque, NM | P.Jagtap |
2013 | | |
Galaxy-P Update:Project-Based Approach to Developing resources for Proteomics Research | MSI @ Minneapolis,MN | P.Jagtap |
2012 | | |
Galaxy-P for Proteomics | GCC @ Chicago,IL | P.Jagtap |