Posters

Requests for copies of the posters listed below can be made through the Contact page above.

TOPICCONFERENCEAUTHOR
2025
Metaproteomics Initiative CAMPI-3: Assessing the impact of Bioinformatic Decision Points on Taxonomic and Functional Annotations in a Simplified Microbial CommunityAmerican Society of Mass Spectrometry 2025, Baltimore MD, June 2025P.Jagtap
Targeted Metaproteomics to detect key early diagnostic host and microbial peptide candidates from precancerous oral leukoplakia patientsAmerican Society of Mass Spectrometry 2025, Baltimore MD, June 2025P.Jagtap
Meta-iPep: A Galaxy-based Metaimmunopeptidomics bioinformatics pipeline rigorously characterizes microbial peptide antigens bound to the Human leukocyte antigen (HLA) complexGBCC, CSHL-New York 2025K.Do
Host and Microbial Signatures for Ovarian Cancer Detection: An Omics StudyAmerican Society of Mass Spectrometry 2025, Baltimore MD, June 2025S.Mehta
Metaproteomic insights into canine bladder stone formationAmerican Society of Mass Spectrometry 2025, Baltimore, MD, June 2025A.Rajczewski
2024
Clinical Metaproteomics workflow to study Host-Microbiome dynamicsHUPO 2024P.Jagtap
No enzyme? No problem! An accessible, scalable cloud-based solution for efficient MS-based endogenous peptidomics and immunopeptidomicsAmerican Society of Mass Spectrometry 2024, Anaheim CA, June 2024T.Griffin
De Novo Library Construction for Metaproteomic Analysis of Human DatasetsAmerican Society of Mass Spectrometry 2024, Anaheim CA, June 2024A.Rajczewski
An Update on the FragPipe Galaxy Tool for Proteomics WorkflowsGCC, Brno, Czech Republic, June 2024R.Wagner
Investigating Key Host, Microbial and Variant Peptides for Detection of Oral Cancer using Advanced Multi-omics Methods.US HUPO, Portland, OR, March 2024P.Jagtap
A Novel Microbe-Host Biomarker Panel for Early Detection of Ovarian Cancer in Routinely Collected Pap Test Clinical SamplesUS HUPO, Portland, OR, March 2024T.Griffin

Posters Archive

These are for reference only.

TOPICCONFERENCEAUTHOR
2023
Clinical Metaproteomic Data Analysis using Galaxy Training NetworkLSSURP2023, Minneapolis, MN, May 2023D.Bhuming
Bioinformatic Workflow for Metaproteomic Analysis of Host-Microbe Dynamics in Clinical SamplesUS-HUPO Conference, Chicago, IL. March 2023.P.Jagtap
Metaproteomics analysis of ground-truth dataset using predicted deep learning library searchingAmerican Society of Mass Spectrometry 2023, Houston, TX. June 2023.P.Jagtap
Clinical Metaproteomic Data Analysis using Galaxy Training NetworkLife Sciences Summer Undergraduate Research Program (LSSURP) Poster Session, Minneapolis, MN. August 2023.D.Bhuming
A Complete, Modular and Flexible Proteogenomic Pipeline For Peptide Neoantigen Dsicovery and VerificationAmerican Society of Mass Spectrometry 2023, Houston, TX. June 2023.T.Griffin
Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Cross-Laboratory Methodological Comparisons Using a Model MicrobiomeAmerican Society of Mass Spectrometry 2023, Houston, TX. June 2023.A.Rajczewski
Peptidomic characterization of protease activity and biomarker discovery of COPD pathogenesis associated with HIV in clinical BALF samplesAmerican Society of Mass Spectrometry 2023, Houston, TX. June 2023.M.Kruk
2022
Investigating the Role of Microbial Proteins Found in Clinical Samples Relevant to Human DiseaseLSSURP2022, Minneapolis, MN, May 2022K.Do
Omicron, Delta Waves and Beyond: Variant-specific peptide panels for diagnosis, characterization, and surveillance of emerging SARS-CoV-2 variants during the pandemicASMS 2022 Conference, MinneapolisS.Mehta
An integrated workflow for host-microbiota proteomics and targeted assay development to study host-microbe dynamics in clinical cystic fibrosis samplesASMS 2022 Conference, MinneapolisM.Kruk
“Bottom-Up against FIRE”: Comparing bottom-up proteomics and a modified Edman degradation methodology for automated, untargeted protein adductomics analysis within the Galaxy platform. ASMS and GCC 2022 Conference, MinneapolisA.Rajczewski
Comparing bottom-up proteomics and the FIRE methodology for untargeted protein adductomicsACS 2022 ConferenceA.Rajczewski
2021
Identifying Microbial Proteins in Lower Airways of Infants and Young Children with Cystic FibrosisLSSURP2021, Minneapolis, MN, May 2021K.Do
Probing molecular mechanisms of tobacco smoke-induced lung inflammation via cell-specific multi-omic analysis in a murine smoke exposure model ASMS 2021A.Rajczewski
Tackling challenges in clinical metaproteomic analysis of bronchoalveolar lavage fluid to characterize microbial contributors to cystic fibrosisASMS 2021M.Kruk
Advancing Mass Spectrometry-based COVID-19 diagnostics by identifying optimal biomarker peptides from emerging strains from non-invasively collected clinical samplesASMS 2021S.Mehta
ComPIL 2.0 and MetaNovo tools for metaproteomics searches within Galaxy: searching for needles in a HaystackGCC 2021R.Wagner
A rigorous evaluation of optimal peptide targets for MS-based clinical diagnostics of Coronavirus Disease 2019USHUPO 2021A.Rajczewski
2020
Exploring chromatogram library-based data independent acquisition analysis using EncyclopeDIA within Galaxy frameworkBCC 2020P.Jagtap
Survey of metaproteomics software tools for functional microbiome analysisBCC 2020R.Sajulga
An Integrated Quantitative Proteogenomics Pipeline Reveals Non-Canonical Variant Peptides in Inflamed Colon TissueUSHUPO 2020A.Rajczewski
Evaluating customized database generation methods for metaproteomics analysis. Link to recording.ASMS 2020 RebootS.Mehta
An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P. Link to recording.ASMS 2020 RebootA.Rajczewski
2019
Developing multi-omic informatics workflows within the Galaxy platform to uncover cancer-microbiome interactionsITCR @ Salt Lake City, UT, USAP.Jagtap
imetaQuantome workflow: An integrated metaproteomics workflow for interactive, statistical and functional microbiome analysisASMS @ Atlanta, GA, USAS.Mehta
Metaproteomics powered by Metatranscriptomics: towards a multi- omic functional microbiome analysisASMS @ Atlanta, GA, USAP.Jagtap
Galaxy on site MetabolomicsGCC @ Freiburg, GermanyA.Eschenlauer
2018
Tackling Analytical challenges in Cancer proteogenomics using Galaxy frameworkPSI @ Pune IndiaP.Jagtap
Integrative proteo-transcriptomics workflows within the Galaxy framework to explore the correlation between the expression of RNA and proteinsGCC @ Portland, OR, USAP.Kumar
Evaluation of moFF and FlashLFQ for label free peptide quantification in proteomic workflows within Galaxy-P Framework.GCC @ Portland, OR, USAS.Mehta
CRAVAT (Cancer-Related Analysis of Variants Toolkit) integration into Galaxy-P and extension towards proteogenomic studiesGCC @ Portland, OR, USAR.Sajulga
Galaxy-based multi-stage two-step database searching pipeline for improved proteogenomics and metaproteomics analysisBICB SymposiumP.Kumar
Galaxy-based multi-stage two-step database searching pipeline for improved multi-omics analysisUS-HUPOP.Kumar
Using HUPO Proteomics Standards With Software Inputs and Outputs for Galaxy-based Multi-omic InformaticsUS-HUPOT.McGowan
Evaluation of precursor-based peptide quantification software tools within the Galaxy frameworkUS-HUPOS.Mehta
Adding another horse to the carriage: using ERLIC-MS with RPLC-MS to help carry the load of expanding protein sequence coverage.ASMS @ SanDiego, CA, USAC.Guerrero
Unraveling the functions of microbiomes: A comprehensive evaluation of software tools for functional metaproteomics.ASMS @ SanDiego, CA, USAC.Easterly
Avoiding Fake news: Post analysis FDR tool for improving confidence in next-generation proteomic results.ASMS @ SanDiego, CA, USAS.Hubler
Slice and Dice: An accessible Galaxy-baed metaproteomic database sectioning approach improves taxonomic and functional microbiome characterization.ASMS @ SanDiego, CA, USAP.Kumar
Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function and protein expression in complex microbiomes.ASMS @ SanDiego, CA, USAP.Jagtap
From raw data to results on your screen: A suite of accessible software for comprehensice proteogenomic informaticsASMS @ SanDiego, CA, USAJ.Johnson
Evaluation of label-free peptide quantification tools and their application to multi-omic workflows within the Galaxy-P framework.ASMS @ SanDiego, CA, USAS.Mehta
2017
Development and evaluation of Galaxy based one-click multi stage database searching pipeline for proteogenomics analysisBICB @ Rochester,MNP.Kumar
A Galaxy-based, multi-staged, two-step searching pipeline for improved peptide identification in next generation proteomic studiesASMS @ Indianapolis,INP.Kumar
Enhancing The Multi-Omics Visualization Platform (MVP) Plug-In For Galaxy-Based ApplicationsASMS @ Indianapolis,INT.McGowan
Multi-omic informatics in the cloud: Galaxy-P takes a ride on JetstreamASMS @ Indianapolis,INT.Griffin
Galaxy-Centered Lab Workflows To Organize Metabolomic AnalysesASMS @ Indianapolis,INA.Eschenlauer
Functional analysis of microbiomes by metaproteomics withing Galaxy frameworkASM @ New Orleans,LAP.Jagtap
2016
From Start to Finish: a complete proteogenomic informatics environment implemented in the Galaxy platformASMS @ San Antonio, TXG.Onsongo
A Multi-omics Visualization Platform (MVP) Plug-in for Galaxy-based applicationsASMS @ San Antonio, TXT.McGowan
Complementary ERLIC and RPLC online separations significantly expand sequence coverage in MS-based Proteomic and Protegenomic StudiesASMS @ San Antonio, TXC.Guerrero
Galaxy-P: Recent developments and emerging applicationASMS @ San Antonio, TXT.Griffin
2015
Democratizing and expanding the reach of DIA Mass spectrometry: Developing OpenSwath tools and workflows within user-friendly Galaxy-P platformASMS @ St.Louis, MOP.Jagtap
Metaproteomic analysis of human cervical-vaginal fluid in residual Pap tests: Insights into the cervical microbiomeASMS @ St.Louis, MOT.Griffin
Revealing Pathways In COPD-Associated Lung Cancer Via Large-Scale Quantitative Multi-omic AnalysisASMS @ St.Louis, MOB.Sandri
Plugging Proteomics Peptide-Spectral -Match visualization infor GalaxyASMS @ St.Louis, MOJ.Johnson
2014
Flexible, accessible and reproducible workflows for Tandem proteogenomic and metaproteomic analysis using GalaxyP platformASMS @ Baltimore, MDP.Jagtap
The Galaxy framework as a unifying bioinformatics solution for ‘Omics’ core facilitiesABRF @ Alburquerque, NMP.Jagtap
Identifying Novel Peptide Sequence Variants from High Throughput RNA-Seq Data Via Flexible Proteomic Database Generation using the Galaxy FrameworkASMS @ Baltimore, MDJ.Johnson
Community-Based development and evaluation of biological mass spectrometry software via the Galaxy tool shedASMS @ Baltimore, MDB.Gottschalk
2013
An Integrated Systems biology platform for complete proteogenomic analysisASMS @ Minneapolis, MNP.Jagtap
Reproducible Proteomic workflows using extensions to the Galaxy frameworkASMS @ Minneapolis, MNJ.Johnson
Quantitative Analysis of the C2C12 and Mouse Skeletal Muscle Proteomes using a Multiplexing StrategyASMS @ Minneapolis, MNM.Henderson
Building Proteomic Application Platforms for Cloud Computing Environments with CloudBioLinuxASMS @ Minneapolis, MNJ.Chilton
A comprehensive characterization of the pig islet proteome: PTMs, amino acid substitutions and novel isoformsASMS @ Minneapolis, MNE.Jong
Automated Quantification and Analysis of SILAC-iTRAQ Dual-labeled DataASMS @ Minneapolis, MNG.Onsongo
Galaxy-P: Transforming MS-based proteomic informatics via innovative workflow development, dissemination, standardization and transparencyASMS @ Minneapolis, MNT.Griffin