| 2025 | | |
| Clinical Metaproteomics workflow to study Host-Microbiome dynamics | APT- 2025, Mumbai, India, Feb 2025 | P.Jagtap |
| CAMPI3: Annotations | IMS6, Oslo, Jan 2025 | P.Jagtap |
| Meta-iPep: A meta-immunopeptidomics pipeline implemented within Galaxy platform to characterize HLA-bound microbial peptides for immunotherapy | GBCC, CSHL-New York June 2025 | K.Do |
| Clinical Metaproteomics workflow to study Host-Microbiome dynamics | ILS Bhubaneshwar, Feb 2025 | P.Jagtap |
| Mass Spectrometry-Centered Multi-Omics: Advancing Galaxy Training Materials for Integrated Analysis and Community Adoption | GBCC, CSHL-New York June 2025 | S.Mehta |
| Clinical Metaproteomics workflow to study Host-Microbiome dynamics | NCCS Pune, India, Feb 2025 | P.Jagtap |
| Mass spectrometry-based proteomics-centered multi-omics: applications to clinical lung disease research | PACSS, Online | T.Griffin |
| Metaproteomic Approach to Detect Key Host and Microbial Peptides from Oral Leukoplakia samples | IMS6, Oslo Jan 2025 | P.Jagtap |
| 2024 | | |
| Clinical Metaproteomics workflow to study Host-Microbiome dynamics | BMBB Retreat St. Paul, MN, 2024 | P.Jagtap |
| Clinical Metaproteomics workflow to study Host-Microbiome dynamics | Robert Koch Institute, Berlin, 2024 | P.Jagtap |
| Investigating Key Host, Microbial and Variant Peptides for Detection of Oral Cancer using Advanced Multi-omics Methods. | American Society of Mass Spectrometry 2024, Anaheim CA, June 2024 | P.Jagtap |
| Proteome Informatics Research Group (iPRG) | ABRF, Minneapolis, MN, April 2024 | P.Jagtap |
| Clinical Metaproteomics Workflow To Study Host-Microbiome Dynamics | University of Vienna, June 2024 | P.Jagtap |
| A Novel Host And Microbial Biomarker Panel For Early Detection Of Ovarian Cancer | Minnesota Ovarian Cancer Alliance, Minneapolis MN, May 2024 | T.Griffin |
| The Proteogenomics Shared Resource: From Novel proteoforms to microbiome functions in Cancer Using customized multi-omic Tools | Masonic Cancer Center, Minneapolis, MN May 2024 | P.Jagtap, T.Griffin |
| A Galaxy-based immunopeptidogenomic pipeline for neoantigen discovery | GCC,Brno, Czech Republic, June 2024 | T.Griffin |
| Clinical Metaproteomics Workflow To Study Host-Microbiome Dynamics | GCC, Brno, Czech Republic, June 2024 | P.Jagtap |
| 2023 | | |
| Enrichment Of Microbial Proteins For Mass Spectrometry-Based Clinical Metaproteomics Studies | Cancer Microbiome Symposium. Minneapolis, September 2023 | P.Jagtap |
| Towards an integrated microbiome-host protein biomarker panel for early detection of ovarian cancer in routinely collected clinical samples | Cancer Microbiome Symposium. Minneapolis, September 2023 | T.Griffin |
| Metaproteomics: Bioinformatic Workflow for Metaproteomic Analysis of Clinical Samples | Agharkar Research Institute, Pune (India). February 2023 | P.Jagtap |
| Bioinformatic Workflow for Metaproteomic Analysis of Host-Microbe Dynamics in Clinical Samples | Fifth International Metaproteomics Symposium, Avignon (France). April 2023. | P.Jagtap |
| Integrative Multiomics in Galaxy | Fifth International Metaproteomics Symposium, Avignon (France). April 2023. | P.Jagtap, M.Arntzen |
A meta-omics workflow to generate a novel host and microbial
biomarker panel for early detection of ovarian cancer | American Society of Mass Spectrometry 2023, Houston, TX. June 2023. | S.Mehta |
| 2022 | | |
| A Metaproteomics Bioinformatics Workflow To Study Host- Microbe Dynamics In Clinical Samples | Human Proteomics Organization (HUPO) Conference, Cancun (Mexico). December 2022. | P.Jagtap |
| Towards an integrated microbiome‐host protein biomarker panel for early detection of ovarian cancer in routinely collected clinical samples | Masonic Cancer Center Microbiome and Cancer Symposium, September, 2022, University of Minnesota | T.Griffin |
| An integrated galaxy-driven workflow for host-microbiota proteomics and targeted assay development to study host-microbe dynamics in clinical cystic fibrosis samples | GCC 2022, Minneapolis | T.Griffin |
| METAPROTEOMICS: Promoting Functional Analysis of Microbiome through online educational resources. | Colorado State University (ARC-BIO Webinar Series) | P.Jagtap |
| Can data-independent acquisition mass spectrometry be used confidently for metaproteomics? | ASMS 2022 Conference, Minneapolis | P.Jagtap |
| FragPipe in Galaxy: Wrapper Implementation for a Complete Proteomics Tool Suite | GCC 2022, Minneapolis | R.Wagner |
| TO SEEK OUT NEW TALENT AND NEW PERSPECTIVES: PROMOTING FUNCTIONAL ANALYSIS OF MICROBIOME THROUGH ONLINE EDUCATIONAL RESOURCES VIA THE GALAXY PLATFORM | GCC 2022, Minneapolis | P.Jagtap |
| Omicron, Delta Waves and Beyond: Galaxy-generated variant-specific peptide panels for diagnosis, characterization, and surveillance of emerging SARS-CoV-2 variants | GCC 2022, Minneapolis | S.Mehta |
| Introduction to the Galaxy-P Project | IIT Bombay, Mumbai (Maharashtra) | P.Jagtap |
| Introduction to Metaproteomics | IIT Bombay, Mumbai (Maharashtra) | P.Jagtap |
| “Bottom-Up against FIRE”: Comparing bottom-up proteomics and a modified Edman degradation methodology for automated, untargeted protein adductomics analysis within the Galaxy platform. | GCC 2022, Minneapolis | A.Rajczewski |
| Enabling Proteo-informatics Analysis via Galaxy-P Platform | CSIR-IMTech, Chandigarh (Haryana/Punjab) | P.Jagtap |
| Our Experiments With Metaproteomics: Ten Years of Galaxy-P | Tata Institute of Fundamental Research, Mumbai (Maharashtra) | P.Jagtap |
| Our Experiments With Metaproteomics: Ten Years of Galaxy-P | CSIR-National Institute of Oceanography, Dona Paula (Goa) | P.Jagtap |
| A METAPROTEOMICS BIOINFORMATICS WORKFLOW TO STUDY HOST-MICROBE DYNAMICS IN CLINICAL SAMPLES | IMSC 2022, Maastricht (Netherlands) | P.Jagtap |
| 2021 | | |
| Functional Microbiome Analysis Using Quantitative Metaproteomics within the Galaxy Framework. | Special Seminar Series on Microbiomes organized by NSERC CREATE TECHNOMISE, University of Ottawa | P.Jagtap |
| Metaproteomics: Analyzing Microbiomes Using Proteomics. | Tri-Service Microbiome Consortium Topical Meeting: Microbiome Bioinformatics | P.Jagtap |
| Functional Microbiome Analysis Using Quantitative Metaproteomics within the Galaxy Framework. | Special Seminar Series on Microbiomes organized by NSERC CREATE TECHNOMISE, University of Ottawa | P.Jagtap |
| Analysis of Functions Expressed by Microbiomes Using Metaproteomics | HUPO-Reconnect 2021 | P.Jagtap |
| Promoting metaproteomics: Empowering researchers through online, on-demand metaproteomics educational resources and training materials via the Galaxy platform | International Metaproteomics Symposium | P.Jagtap |
| Promoting functional analysis of microbiome through online educational resources via the Galaxy Platform | Proteomics Society of India (CCMB) | P.Jagtap |
| Quantitative Metaproteomics in Microbiomes of Diverse Complexity via Data-dependent and Data-independent Acquisition Mass Spectrometry | ASMS 2021 | P.Jagtap |
| Metaproteomics as a tool to reveal microbial contributions to cancer | Cancer Microbiome UMN2021 | A.Rajczewski |
| Metaproteomics:Analyzing MicrobiomeUsing Proteomics | TSMC-Topical 2021 | P.Jagtap |
| Out of the shadows: Towards community‐based, reproducible informatics tools and workflows for integrative multi‐omic analysis. | IRSA Annual Conference | T.Griffin |
| Galaxy Resources for Educators and Trainers | Galaxy Resources Webinar series | S.Mehta |
| Quantitative Metaproteomics using Galaxy Platform: Measuring functional microbiome via Data-Dependent and Data-Independent Acquisition Mass spectrometry. | GCC 2021 | P.Jagtap and S.Mehta |
| A Galaxy-based multi-omic workflow for discovery and validation of candidate neoantigen peptides for immuno-oncology. | GCC 2021 | T.Griffin |
| A Galaxy-based evaluation of optical peptide targets for MS-based detection of SARS-CoV-2 in clinical samples. | GCC 2021 | A.Rajczewski |
| Galaxy Workflows for analysis of COVID 19 Mass Spectrometry datasets. Link to recording. | ELIXIR - COVID analysis in Galaxy - FEB 2021 | S.Mehta and P.Jagtap |
| iPRG 2020 : Proteome Informatics Research Group Study on Metaproteomics. Link to slides. | ABRF 2021 Virtual (March 2021) | P.Jagtap and M.Palmblad |
| 2020 | | |
| Linking genomes and proteomes for cancer research studies | The MCC Proteogenomics Core - May 2020 | T.Griffin and P.Jagtap |
| Proteogenomics: challenges, applications and opportunities | KDDW 2020 | T.Griffin |
| Data Science Using Galaxy-P Platform. Link to recording. | ICDSB 2020 | P.Jagtap |
| Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. Link to recording. | BCC 2020 | S.Mehta |
| An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P. Link to recording. | BCC 2020 | A.Rajczewski |
| A Galaxy‐Based Multi‐Omic Informatics Hub for Cancer Researchers | NCI Data Science Seminar Series @ WebZoom | P.Jagtap and T.Griffin |
| A Galaxy-based meta-omic approach for characterizing microbiome functional dynamics via integrated metaproteomics and metatranscriptomics abundance analysis | ASMS 2020 Reboot | P.Jagtap |
| 2019 | | |
| Mass spectrometry-based multi-omics for studying health and disease | RPI @ Troy, NY, USA | T.Griffin |
| Functional Microbiome Analysis Within Galaxy Framework | IMTech @ Chandigarh, India | P.Jagtap |
| Proteogenomics tools and workflows within Galaxy platform | PSI @ Karnal, India | P.Jagtap |
| Working towards multi-omics integration: Tools and workflows within Galaxy-P Platform | Elucidata @ New Delhi, India | P.Jagtap |
| Interactive Galaxy Visualization for Multi-omics | GCC @ Freiburg, Germany | R Sajulga |
| Rootless galaxy docker with Backup for our lab Intranet | GCC @ Freiburg, Germany | A. Eschenlauer |
| Metaproteomics powered by Metatranscriptomics: towards a multi-omic functional microbiome analysis within Galaxy | GCC @ Freiburg, Germany | P Jagtap |
| A "Divide and Conquer" approach to address peptide-spectrum matching challenges of large sequence databases in next generation proteomic applications | ASMS @ Atlanta, GA, USA | P Kumar |
| More than just a list: An accessible and flexible informatics environment for proteogenomics | ASMS @ Atlanta, GA, USA | T Griffin |
| Galaxy Metabolomics from the Ground up | PAG@ San Diego, CA, USA | A. Eschenlauer |
| Multi-Omics with Galaxy for Diverse Biological Applications | PAG @ San Diego, CA,USA | T.Griffin and P.Jagtap |
| 2018 | | |
| Introduction to Proteogenomics | Bioinformatics solutions for ‘Big Data’ Analysis - DEC 2018 | P.Jagtap |
| Introduction to Proteogenomics II | Bioinformatics solutions for ‘Big Data’ Analysis - DEC 2018 | P.Jagtap |
| Perspectives on Proteogenomics | Bioinformatics solutions for ‘Big Data’ Analysis - DEC 2018 | P.Jagtap |
| Tackling Analytical challenges in Cancer proteogenomics using Galaxy framework | PSI @ Pune India | P.Jagtap |
| Omics, Comics and Metaproteomics: Analyzing Microbiomes using Proteomics | Saturday Meet Program @ Pune India | P.Jagtap |
| Slice and Splice: An accessible galaxy-based metaproteomic database sectioning approach improves taxonomic and functional microbiome characterization | IMS @ Leipzig, Germany | P.Kumar |
| Metaquantome: An integrated, quantitative metaproteomics tools reveals connections between taxa, function and protein expression in microbiomes. | IMS @ Leipzig, Germany | P.Jagtap |
| Survey of metaproteomics software tools for functional microbiome analysis | IMS @ Leipzig, Germany | P.Jagtap |
| Multi-omic informatics for characterizing microbiomes and their role in health, disease and environment | IMS @ Leipzig, Germany | T.Griffin and M.Arntzen |
| Galaxy-based multi-stage two-step database searching pipeline for improved multi-omics analysis | USHUPO @ Minneapolis, MN, USA | P.Kumar |
| Proteo-transcriptomics workflow exploring correlation between the expression of RNA and proteins | GCC @Portland, OR, USA | P.Kumar |
| Galaxy-P: an accessible resource for multi-omics analysis | Lorne Conference | M. Doyle |
| Quantifying Functional Microbiomes: An integrated, quantitative metaproteomics approach reveals connections between taxa, function & protein expression in complex microbiomes | GCC @ Portland, OR, USA | C.Easterly and P.Jagtap |
| Reproducible and robust quantitative functional analysis of metaproteomes using the Galaxy platform | USHUPO @ Minneapolis, MN | C.Easterly |
| From Raw Data to New Discoveries: Towards a Complete Proteogenomic Informatics Solution | USHUPO @ Minneapolis, MN | T.Griffin |
| A Galaxy based Multi-Omic Informatics hub for Cancer researchers | ITCR | T.Griffin and P.Jagtap |
Quantifying Functional Microbiomes using MetaQuantome:
An integrated, quantitative metaproteomics tool reveals connections between taxa, function and protein expression in microbiomes. | HUPO @ Orlando, FL, USA | P.Jagtap |
| 2017 | | |
| Complementary ERLIC and RPLC online chromatographic separations for discovery of protein sequence variants via LC-MS-based proteogenomics | HPLC@Jeju, Korea | T Griffin |
| Approaches to uncovering the ‘dark’ proteome | BMBB retreat@Itasca,MN | T Griffin |
| GalaxyP: A Galaxy Proteomics Community | GAMe@Melbourne, Australia | I Cooke |
| Functional Microbiome analysis using metaproteomics within Galaxy Framework | University of Chicago, IL | P Jagtap |
| Metaproteomics for the future: Democratizing functional analysis of microbiomes via community based informatics development and dissemination [Video] | ASMS @ Indianapolis,IN | P.Jagtap |
| Metaproteomics for the future: Functional microbiome analysis community based informatics development and dissemination | IMS @ Sardignia,Italy | P.Jagtap |
| Advancing metaproteomics research via comminity based informatics development and dissemination | GCC@ Montepelier, France | P.Jagtap |
| Proteogenomics | Persistent @ Pune,India | P.Jagtap |
| 2016 | | |
| Proteogenomics in Galaxy: Identifying Novel ‘Constellations’ of Proteoforms using Transcriptomic and Proteomics Data [Video] | GCC @ Bloomington,IN | P.Jagtap |
| New biochemical discoveries made possible by multi-omics | UW@LaCrosse,WI | T.Griffin |
| Embracing complexity and diversity: Metaproteomics within the Galaxy framework [Video] | GCC @ Bloomington,IN | P.Jagtap |
| The Galaxy platform for Multi-omic data analysis and Informatics | ABRF @ Fort Lauderdale,FL | D.Clements |
| Embracing complexity and diversity: Discovery Metaproteomics of multiple microbiomes using the Galaxy framework | ASMS @ San Antonio, TX | P.Jagtap |
| 2015 | | |
| Search GUI and Peptide Shaker deployed in the Galaxy framework: A powerful informatics platform for protein identification and beyond | ASMS @ St.Louis, MO | I.Cooke |
| Proteomics data analysis using Galaxy-P | CMSP @ Ferrington | P.Jagtap |
| Galaxy-Based Peptide Shaker tools and applications with a focus on downstream applications | ASMS @ St.Louis, MO | I.Cooke |
| The Galaxy framework as a bioinformatics solution for proteomics and multi-omics studies | ABRF @ St.Louis, MO | P.Jagtap |
| Proteogenomics and Metaproteomics using the Galaxy Platform | Multiomics_Talks @ CCMB, India | P.Jagtap |
| Proteogenomics and Metaproteomics using the Galaxy Platform | Multiomics_Talks @ IICT, India | P.Jagtap |
| Proteogenomics and Metaproteomics using the Galaxy Platform | Multiomics_Talks @ Delhi, India | P.Jagtap |
| 2014 | | |
| Public Sharing Of Complex MS-Based Qualitative And Quantitative Proteomic Data Analysis Workflows: Adding Value To Big Data Repositories | ASMS @ Baltimore, MD | T.Griffin |
| The Galaxy framework as a unifying bioinformatics solution for ‘omics’ core facilites | GCC @ Baltimore,MD | P.Jagtap |
| Large scale multi-omic data integration and analysis: Challenges and Oppurtunities | BICB symposium @ Rochestor, MN | T.Griffin |
| Metaproteomics: and opportunity-rich complement to metagenomics | Metagenomics Supergroup @ Minneapolis,MN | T.Griffin |
| DIA : Learnings from Alburqurque | ABRF @ Alburquerque, NM | P.Jagtap |
| The Galaxy framework as a unifying bioinformatics solution for Multi-omic data analysis | ABRF @ Alburquerque, NM | P.Jagtap |
| 2013 | | |
| Galaxy-P Update:Project-Based Approach to Developing resources for Proteomics Research | MSI @ Minneapolis,MN | P.Jagtap |
| 2012 | | |
| Galaxy-P for Proteomics | GCC @ Chicago,IL | P.Jagtap |
