Access to software
We are continuously striving to provide access to tools developed by the Galaxy-P team and collaborators. Below is a summary of some resources available for accessing software tools.
Galaxy-P on usegalaxy.eu
We partner with members of the European Galaxy community to maintain tools and workflows for MS-based proteomic applications on the site proteomics.usegalaxy.eu. Here, we provide free access to our most recently optimized software and validated workflows. Additionally, the usegalaxy.org and usegalaxy.org.au sites can be freely accessed and used to run published Galaxy-based software tools.
Galaxy Training Network
The Galaxy-P team actively contributes online, on-demand training material to the Galaxy Training Network (GTN). We have contributed a number of tutorials, complete with training documentation, links to tools and workflows and testing data, in the proteomics category of the GTN resource.
Jetstream is a U.S.-based, national cyberinfrastructure for cloud-based scientific computing. Jetstream supports Galaxy as a platform for bioinformatics. U.S.-based researchers can apply for Jetstream allocations. Public gateway instances can be established that offer access to anyone in the world. The Galaxy-P team is currently partnering with Jetstream to make multi-omic Galaxy tools and workflows available.
Note: Galaxy-P has set up a publically accessible Galaxy instance on the Jetstream cloud-based cyberinfrastructure resource.
a. Proteogenomics instance: z.umn.edu/proteogenomicsgateway
b. Metaproteomics Instance: z.umn.edu/metaproteomicsgateway
c. Galaxy Proteomics Europe: proteomics.usegalaxy.eu
Galaxy Tool Shed
As we deploy new software tools in Galaxy, and develop workflows for multi-omics data analysis, we publish these in the Galaxy Tool Shed. The Tool Shed is a publically accessible repository enabling sharing of tools and workflows between other Galaxy users. If you would like setting up or running a production Galaxy service or creating your own personal Galaxy instance, use the latest release branch, which only receives stable code updates. Click here to know more about how to create your own Personal Galaxy instance (https://galaxyproject.org/admin/get-galaxy/#get-started).